Ok so I got the carb sync tool and synced my carbs, they were pretty off and I got them really really close. I also messed with my air mixture screw a bit more. The bike was still running like crap. I took a look at my vacuum lines and made sure they were all snug, but more importantly I noticed the large line coming from the top of the airbox was routed kinda funny and where it connects to the T piece was not plugged in right. Kind of hard to explain but I switched where they were plugged in, put it all together and took it for a ride. Sucker screamed. So far so good. I'll post back when I put a few more miles on it.
This is where I found some info on vacuum lines:
R6 Bogging
Linear Mode
