I was curious about this also. So I did the dyno pulls to satisfy my curiosity.
My bike is a 3 month old 09 R6r with 300miles on it. I dyno'd my bike with my ECU, my bike with my buddies 08 ECU, and a few other ways that weren't productive. Here are the dyno sheets below. No A/F adjustments were made during this. Just plug and unplug ECU's and re-dyno within a few minutes.
My bike with 09 ECU.
My bike with 08 ECU.
My bike with multiple pulls overlayed. The 09 ECU is the red line. The 08 is the green.
I wish the tuner would have displayed RPM's instead of speed on the X-axis, but I didn't see it until after all was complete.